Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2012 |  | Zlatko Junuzović | MF |  | Austria Wien | Austria Wien |
| 01/2012 |  | François Affolter | DF |  | BSC Young Boys | Young Boys |
| 01/2012 |  | Niclas Füllkrug | FW |  | Werder Bremen II | Werder II |
| 08/2011 | | Florian Hartherz | DF |  | VfL Wolfsburg II | Wolfsburg II |
| 07/2011 |  | Sokratis Papastathopoulos | DF |  | AC Milan | AC Milan |
| 07/2011 | | Lukas Schmitz | DF |  | FC Schalke 04 | Schalke |
| 07/2011 | | Clemens Schoppenhauer | DF | | Werder Bremen II | Werder II |
| 07/2011 | | Andreas Wolf | DF |  | 1. FC Nuremberg | Nuremberg |
| 07/2011 |  | Mehmet Ekici | MF | | 1. FC Nuremberg | Nuremberg |
| 07/2011 |  | Aleksandar Ignjovski | MF |  | 1860 Munich | 1860 Munich |
| 07/2011 | | Aleksandar Stevanović | MF |  | FC Schalke 04 U19 | Schalke U19 |
| 07/2011 | | Tom Trybull | MF |  | Hansa Rostock | Rostock |
| 07/2011 | | Özkan Yildirim | MF |  | Werder Bremen U19 | Werder U19 |
| 07/2011 |  | Márkó Futács | FW |  | FC Ingolstadt 04 | Ingolstadt |
| 07/2011 |  | Markus Rosenberg | FW |  | Racing Santander | Racing |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2012 |  | Wesley | MF |  | Palmeiras | Palmeiras |
| 01/2012 | | Andreas Wolf | DF |  | AS Monaco | AS Monaco |
| 01/2012 | | Sandro Wagner | FW |  | 1. FC Kaiserslautern | K'lautern |
| 08/2011 | | Per Mertesacker | DF |  | Arsenal FC | Arsenal |
| 08/2011 | | Márkó Futács | FW |  | Portsmouth FC | Portsmouth |
| 08/2011 | | Kevin Schindler | MF |  | FC St. Pauli | St. Pauli |
| 07/2011 | | Felix Wiedwald | GK |  | MSV Duisburg | Duisburg |
| 07/2011 |  | Petri Pasanen | DF |  | RB Salzburg | RB Salzburg |
| 07/2011 | | Samuel | DF |  | RSC Anderlecht | Anderlecht |
| 07/2011 | | Dominik Schmidt | DF |  | Eintracht Frankfurt | E. Frankfurt |
| 07/2011 | | Torsten Frings | MF |  | Toronto FC | Toronto FC |
| 07/2011 | | José Ikeng | MF | | FC Ingolstadt 04 | Ingolstadt |
| 07/2011 | | Pascal Testroet | FW |  | Kickers Offenbach | Offenbach |