Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 04/2025 |  | Christoforos Kolimatsis | MF |  | AEK Athen U19 | AEK Athen U19 |
| 03/2025 |  | Donaldoni Nguemechieu | FW |  | AEK Athen II | AEK Athen II |
| 03/2025 |  | Elián Sosa | FW | | AEK Athen II | AEK Athen II |
| 02/2025 | | Loukas Maroutsis | DF | | AEK Athen II | AEK Athen II |
| 02/2025 | | Hamed Fofana | MF | | AEK Athen II | AEK Athen II |
| 02/2025 | | Dimitrios Theodoridis | FW | | AEK Athen II | AEK Athen II |
| 12/2024 | | Christos Giannoulis | DF | | AEK Athen II | AEK Athen II |
| 12/2024 | | Christos Kosidis | DF | | AEK Athen II | AEK Athen II |
| 09/2024 |  | Anthony Martial | FW | |||
| 09/2024 |  | Frantzdy Pierrot | FW |  | Maccabi Haifa | M. Haifa |
| 08/2024 | | Angelos Angelopoulos | GK | | AEK Athen II | AEK Athen II |
| 07/2024 | | Dimitrios Goumas | GK | | AEK Athen II | AEK Athen II |
| 07/2024 | | Érik Lamela | FW |  | Sevilla FC | Sevilla |
| 07/2024 |  | Moses Odubajo | DF |  | Aris Saloniki | Aris Saloniki |
| 07/2024 |  | Aboubakary Koita | FW |  | Sint-Truidense VV | STVV |
| 07/2024 |  | Alberto Brignoli | GK |  | Panathinaikos A.O. | Panathinaikos |
| 07/2024 |  | Thomas Strakosha | GK |  | Brentford FC | Brentford |
| 07/2024 | | Roberto Pereyra | MF |  | Udinese Calcio | Udinese |
| 07/2024 | | Michalis Kosidis | FW |  | VVV-Venlo | VVV |
| 07/2024 | | Sotiris Tsiloulis | FW |  | Lamia | Lamia |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2025 | | Dimitrios Goumas | GK |  | PK-35 Vantaa | PK-35 |
| 02/2025 |  | Levi García | FW |  | Spartak Moskva | Spartak |
| 01/2025 |  | Nordin Amrabat | FW |  | Hull City | Hull City |
| 01/2025 | | Konstantinos Galanopoulos | MF |  | APOEL Nikosia | APOEL |
| 01/2025 |  | Steven Zuber | FW |  | FC Zürich | FC Zürich |
| 09/2024 |  | Rodolfo Pizarro | MF |  | Mazatlán FC | Mazatlán FC |
| 09/2024 |  | Zini | FW |  | Levadiakos | Levadiakos |
| 09/2024 | | Theodosis Macheras | FW |  | Vitesse | Vitesse |
| 08/2024 | | Georgios Athanasiadis | GK |  | AEK Larnaca | AEK Larnaca |
| 08/2024 |  | Vedad Radonja | DF | | Lamia | Lamia |
| 08/2024 | | Konstantinos Chrysopoulos | DF |  | Anorthosis Famagusta | Anorthosis |
| 08/2024 | | Djibril Sidibé | DF |  | Toulouse FC | Toulouse |
| 07/2024 | | Michalis Kosidis | FW |  | Puszcza Niepołomice | Puszcza Niepołomice |
| 07/2024 | | Ezequiel Ponce | FW |  | Houston Dynamo | H. Dynamo |
| 07/2024 |  | Tom van Weert | FW |  | Atromitos | Atromitos |