Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 |  | Dimitrios Zografakis | MF |  | Panionios GSS | Panionios |
| 01/2007 |  | Héctor González | MF |  | LDU Quito | LDU Quito |
| 07/2006 | | Nikolaos Anastasopoulos | GK |  | Xanthi FC | Xhanti FC |
| 07/2006 |  | Sofronis Avgousti | GK |  | Apollon Limassol | Apollon Limass. |
| 07/2006 |  | Peter Hodulík | GK |  | FC Senec | FC Senec |
| 07/2006 | | Andreas Photiou | GK | |||
| 07/2006 | | Marios Georgiou | DF | |||
| 07/2006 |  | Samuel Kingsley | DF |  | KRC Harelbeke | Harelbeke |
| 07/2006 | | Kyriakos Kyriakou | DF | |||
| 07/2006 | | Dimitris Maris | DF |  | Digenis Morphou | Digenis Morphou |
| 07/2006 | | Michalis Prodromou | DF | |||
| 07/2006 | | Georgios Simos | DF |  | AE Lárissa | AE Lárissa |
| 07/2006 | | Constantinos Charpas | MF | | Apollon Limassol | Apollon Limass. |
| 07/2006 | | Stephanos Georgiou | MF | |||
| 07/2006 | | Charis Nicolaou | MF |  | Omonia Nikosia | Omonia Nikosia |
| 07/2006 |  | Paulo Adriano | MF |  | Académica de Coimbra | Académica |
| 07/2006 | | Artemis Savva | MF | |||
| 07/2006 |  | Raymond Victoria | MF |  | Willem II | Willem II |
| 07/2006 |  | Donny de Groot | FW |  | De Graafschap | De Graafs. |
| 07/2006 | | Miguel Fidalgo | FW |  | CD Nacional | CD Nacional |
| 07/2006 |  | Mustafa N'Daw | FW |  | B68 Toftir | B68 |
| 07/2006 | | Christos Xenofontos | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 | | Kyriakos Pavlou | MF | | Panionios GSS | Panionios |
| 01/2007 | | Georgios Simos | DF |  | Ionikos Nikea | Ionikos |
| 01/2007 | | Paulo Adriano | MF |  | Vitória Guimarães | Vitória SC |
| 07/2006 | | Angelos Georgiou | GK |  | APS Zakynthos | APS Zakynthos |
| 07/2006 | | Panayiotis Kythreotis | GK |  | APOEL Nikosia | APOEL |
| 07/2006 | | Giannis Demosthenous | DF |  | ENTHOI Lakatamia | ENTHOI Lakatamia |
| 07/2006 |  | Ismaël Ba | MF | | Omonia Nikosia | Omonia Nikosia |
| 07/2006 | | Pedro Moita | MF |  | Leixões SC | Leixões SC |
| 07/2006 |  | Narcis Raducan | MF |  | AEL Limassol | AEL Limassol |
| 07/2006 | | Charis Siligardakis | MF |  | Anorthosis Famagusta | Anorthosis |
| 07/2006 |  | George Datoru | FW |  | Hapoel Be'er Sheva | H. Be'er Sheva |