Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2017 |  | Vinícius Freitas | DF |  | Lazio Roma | Lazio |
| 01/2017 |  | Sergio Araujo | FW |  | UD Las Palmas | UD Las Palmas |
| 01/2017 |  | Manolo Jiménez | MA | |||
| 01/2017 | | Jesús Calderón Malagón | AS-CO | |||
| 01/2017 | | Sebastian Lopez | AT-C | |||
| 01/2017 |  | Dimitrios Melikiotis | FW |  | Veria FC | Veria FC |
| 01/2017 |  | Ognjen Vranješ | DF |  | FK Tom Tomsk | FK Tom Tomsk |
| 01/2017 |  | Astrit Ajdarević | MF |  | Örebro SK | Örebro SK |
| 01/2017 | | Andreas Vlachomitros | FW |  | FK Javor | FK Javor |
| 09/2016 | | Giannis Papadopoulos | GK | |||
| 08/2016 |  | Joleon Lescott | DF |  | Aston Villa | Aston Villa |
| 08/2016 | | Lazaros Christodoulopoulos | FW |  | Hellas Verona | Hellas Verona |
| 08/2016 | | Giorgos Giannoutsos | DF |  | AEK Athen U19 | AEK Athen U19 |
| 07/2016 | | Patricio Rodriguez | FW |  | Santos FC | Santos FC |
| 07/2016 | | Vasilis Barkas | GK |  | Atromitos | Atromitos |
| 07/2016 |  | Dmitro Chigrinskiy | DF |  | Dnipro Dnipropetrovsk | Dnipro |
| 07/2016 |  | Juan Díaz | DF |  | Racing | Racing |
| 07/2016 | | Konstantinos Manolas | DF |  | Levadiakos | Levadiakos |
| 07/2016 | | Dimitrios Anakoglou | MF | | Veria FC | Veria FC |
| 07/2016 | | Ilias Tselios | MF | |||
| 07/2016 | | Anastasios Bakasetas | FW |  | Panionios GSS | Panionios |
| 07/2016 |  | Hugo Almeida | FW |  | Hannover 96 | Hannover |
| 07/2016 |  | Temur Ketsbaia | MA |  | APOEL Nikosia | APOEL |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2017 | | Adam Tzanetopoulos | DF |  | AEP Iraklis FC | Iraklis |
| 01/2017 |  | Darko Zorić | MF |  | FK Čukarički | FK Čukarički |
| 01/2017 | | Vangelis Platellas | MF | | Atromitos | Atromitos |
| 08/2016 | | Cordero | MF |  | Gimnàstic de Tarragona | Nàstic |
| 08/2016 | | Hélder Barbosa | FW |  | Al Wasl | Al Wasl |
| 08/2016 | | Dimitrios Anakoglou | MF |  | Aris Saloniki | Aris Saloniki |
| 07/2016 |  | Macauley Chrisantus | FW |  | CF Reus Deportiu | Reus Deportiu |
| 07/2016 |  | Alain Baroja | GK |  | Caracas FC | Caracas FC |
| 07/2016 | | Panagiotis Dounis | GK |  | GS Kallithea | Kallithea |
| 07/2016 | | César Arzo | DF |  | FK Kairat | FK Kairat |
| 07/2016 | | Stratos Svarnas | DF |  | Xanthi FC | Xhanti FC |
| 07/2016 | | Kyriakos Andreopoulos | MF |  | AO Kerkyra | AO Kerkyra |
| 07/2016 | | Aristides Soiledis | MF |  | Omonia Nikosia | Omonia Nikosia |
| 07/2016 | | Stavros Vasilantonopoulos | MF | | Veria FC | Veria FC |
| 07/2016 | | Bruno Zuculini | MF |  | Manchester City | Man City |
| 07/2016 | | Diego Buonanotte | FW |  | Universidad Católica | U. Católica |
| 07/2016 |  | Rafik Djebbour | FW | | Aris Saloniki | Aris Saloniki |
| 07/2016 | | Andreas Vlachomitros | FW | | FK Javor | FK Javor |