Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 09/2016 |  | Giannis Papadopoulos | GK | |||
| 08/2016 |  | Joleon Lescott | DF |  | Aston Villa | Aston Villa |
| 08/2016 | | Lazaros Christodoulopoulos | FW |  | Hellas Verona | Hellas Verona |
| 08/2016 | | Giorgos Giannoutsos | DF |  | AEK Athen U19 | AEK Athen U19 |
| 07/2016 |  | Patricio Rodriguez | FW |  | Santos FC | Santos FC |
| 07/2016 | | Vasilis Barkas | GK |  | Atromitos | Atromitos |
| 07/2016 |  | Dmitro Chigrinskiy | DF |  | Dnipro Dnipropetrovsk | Dnipro |
| 07/2016 |  | Juan Díaz | DF |  | Racing | Racing |
| 07/2016 | | Konstantinos Manolas | DF |  | Levadiakos | Levadiakos |
| 07/2016 | | Dimitrios Anakoglou | MF |  | Veria FC | Veria FC |
| 07/2016 | | Ilias Tselios | MF | |||
| 07/2016 | | Anastasios Bakasetas | FW |  | Panionios GSS | Panionios |
| 07/2016 |  | Hugo Almeida | FW |  | Hannover 96 | Hannover |
| 07/2016 |  | Temur Ketsbaia | MA |  | APOEL Nikosia | APOEL |
| 06/2016 |  | Darko Zorić | MF |  | Borac Čačak | Borac Čačak |
| 05/2016 | | Antonis Kyriazis | MF | |||
| 04/2016 | | Konstantinos Galanopoulos | MF |  | AEK Athen II | AEK Athen II |
| 04/2016 | | Stylianos Manolas | MA | |||
| 03/2016 | | Andreas Vlachomitros | FW | |||
| 02/2016 | | Bruno Zuculini | MF |  | Manchester City | Man City |
| 02/2016 |  | Tomáš Pekhart | FW |  | FC Ingolstadt 04 | Ingolstadt |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2016 | | Dimitrios Anakoglou | MF | | Veria FC | Veria FC |
| 02/2016 |  | Ablaye Faye | MF |  | AO Trikala | Trikala |
| 01/2016 | | Dimitrios Grontis | MF | | Atromitos | Atromitos |
| 12/2015 | | Yannis Antonopoulos | G-AN | | Atromitos | Atromitos |
| 09/2015 | | Markos Dounis | FW |  | Aris Saloniki | Aris Saloniki |
| 08/2015 | | Darko Zorić | MF | | Borac Čačak | Borac Čačak |
| 08/2015 | | Giorgos Sarris | DF |  | Erciyesspor | Erciyesspor |
| 08/2015 |  | D'Acol | FW |  | Hamilton Academical | Hamilton |