Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 |  | André Muff | FW | |||
| 07/2006 | | Riccardo Meili | GK |  | FC Basel 1893 | FC Basel |
| 07/2006 | | Beat Weber | GK | |||
| 07/2006 | | Diego Würmli | GK |  | FC Wil 1900 | FC Wil |
| 07/2006 | | Adrian Eugster | DF |  | FC Aarau | FC Aarau |
| 07/2006 | | Beg Ferati | DF | |||
| 07/2006 |  | Patrick Gerhardt | DF |  | BSC Young Boys | Young Boys |
| 07/2006 |  | David Córdoba | MF |  | Quilmes | Quilmes |
| 07/2006 | | Nikolaj Gavrić | MF | |||
| 07/2006 | | Marco Mathys | MF | |||
| 07/2006 | | Nico Thüring | MF | |||
| 07/2006 |  | Raúl Bobadilla | FW |  | River Plate II | River Plate II |
| 07/2006 | | Alex Gavric | FW |  | FC Winterthur | FC Winterthur |
| 07/2006 | | Sven Jegge | FW | |||
| 07/2006 | | Ali Özcakmak | FW |  | Elazığspor | Elazığspor |
| 07/2006 | | Stefan Todorovic | FW | |||
| 07/2006 | | Walter Grüter | MA | |||
| 07/2006 | | Murat Yakin | AS-CO | | FC Basel 1893 | FC Basel |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 05/2007 | | Walter Grüter | MA |  | Grasshopper Club Zürich | Grasshoppers |
| 05/2007 | | Murat Yakin | AS-CO | | Grasshopper Club Zürich | Grasshoppers |
| 02/2007 | | Florian Onken | MF |  | SR Delémont | SR Delémont |
| 01/2007 | | Diego Würmli | GK |  | FC Basel 1893 II | FC Basel II |
| 01/2007 | | Adrian Eugster | DF |  | FC Grenchen 15 | FC Grenchen |
| 10/2006 | | Sven Jegge | FW |  | SC YF/Juventus Zürich | YF Juventus |
| 08/2006 | | Claudio Megna | DF | | FC Winterthur | FC Winterthur |
| 07/2006 |  | Paolo Collaviti | GK |  | Yverdon Sport FC | Yverdon |
| 07/2006 | | Nikola Nikolic | DF |  | FC Laufen | FC Laufen |
| 07/2006 |  | Oscar Tato | DF |  | FC Black Stars Basel | Black Stars |
| 07/2006 | | Sebastian Kollar | MF |  | FC Zürich | FC Zürich |
| 07/2006 |  | Arjan Peço | MF | | FC Laufen | FC Laufen |
| 07/2006 | | Edgar Yrusta | FW |  | FC La Chaux-de-Fonds | La Chaux-de-Fon |