Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2001 |  | Athanasios Demirtzoglou | MF |  | Panionios GSS | Panionios |
| 01/2001 | | Stelios Kozanidis | MF |  | PAS Giannina | PAS Giannina |
| 01/2001 | | Konstantinos Tsalikis | MF | | PAS Giannina | PAS Giannina |
| 07/2000 | | Panagiotis Ikonomou | GK | |||
| 07/2000 |  | Serge Sironval | GK |  | FCV Dender EH | FCV Dender EH |
| 07/2000 | | Michail-Răzvan Berneanou | DF |  | AEP Iraklis FC | Iraklis |
| 07/2000 | | Giannis Kalitzakis | DF |  | AEK Athen | AEK Athen |
| 07/2000 | | Vasilios Kastaniotis | DF | |||
| 07/2000 | | Nikolaos Livathinos | DF | |||
| 07/2000 |  | Serge Mimpo | DF | |||
| 07/2000 |  | Nick Tolios | DF |  | Carlton SC | Carlton |
| 07/2000 | | Giannis Voulgaris | DF | |||
| 07/2000 | | Joe Bacak | MF |  | Hertha BSC | Hertha BSC |
| 07/2000 | | Petros Marinakis | MF |  | OFI Heraklion | OFI |
| 07/2000 |  | Ivan Nedeljković | MF | |||
| 07/2000 | | Konstantinos Papadopoulos | MF | |||
| 07/2000 | | Marios Segos | MF | |||
| 07/2000 | | Georgios Skopelitis | MF | |||
| 07/2000 | | Alexandros Alexoudis | FW |  | Panathinaikos A.O. | Panathinaikos |
| 07/2000 | | Georgios Kiourkos | FW | | Panionios GSS | Panionios |
| 07/2000 | | Giannis Thomaidis | FW | |||
| 07/2000 |  | Ville Väisänen | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2001 | | Nick Tolios | DF |  | South Melbourne FC | South Melbourne |
| 01/2001 | | Petros Marinakis | MF | | OFI Heraklion | OFI |
| 01/2001 | | Alexandros Alexoudis | FW | | OFI Heraklion | OFI |
| 01/2001 | | Ville Väisänen | FW |  | Haka Valkeakoski | Haka |
| 07/2000 |  | Mislav Bradvić | MF |  | NK Cakovec | NK Čakovec |
| 07/2000 | | Branko Milovanovic | MF |  | Milicionar | Milicionar |
| 07/2000 | | Konstantinos Tsalikis | MF | | PAS Giannina | PAS Giannina |
| 07/2000 | | Jean-Jacques Missé-Missé | FW |  | RAAL La Louvière | La Louvière |
| 07/2000 | | Stanko Svitlica | FW |  | FK Čukarički | FK Čukarički |