Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/1999 |  | Christos Kiourkos | GK | |||
| 07/1999 | | Tasos Mavridis | GK |  | Panelefsiniakos Elefsinas | Panelefsiniakos |
| 07/1999 |  | Stevan Stojanović | GK |  | BV Cloppenburg | Cloppenb. |
| 07/1999 | | Dionysis Georgopoulos | DF | |||
| 07/1999 |  | Youssef Salimi | DF |  | OGC Nice | Nice |
| 07/1999 |  | Houssine Benali | MF |  | KSV Roeselare | Roeselare |
| 07/1999 |  | Mislav Bradvić | MF |  | Hrvatski Dragovoljac | Hrvatski Dragovoljac |
| 07/1999 | | Branko Milovanovic | MF |  | AEK Athen | AEK Athen |
| 07/1999 | | Christos Panagoulis | MF | |||
| 07/1999 | | Georgios Podaras | MF |  | Panathinaikos A.O. | Panathinaikos |
| 07/1999 | | Sotiris Psaroudakis | MF | |||
| 07/1999 | | Darko Tešović | MF |  | Partizan | Partizan |
| 07/1999 | | Dimitrios Ermilios | FW | |||
| 07/1999 |  | Jean-Jacques Missé-Missé | FW |  | RAAL La Louvière | La Louvière |
| 07/1999 | | Vangelis Stavrakopoulos | FW | |||
| 07/1999 | | Stanko Svitlica | FW |  | Spartak Subotica | Sp. Subotica |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/1999 | | Vangelis Chosadas | GK |  | OFI Heraklion | OFI |
| 07/1999 | | Christos Samaras | DF |  | AO Trikala | Trikala |
| 07/1999 | | Avraam Xanthopoulos | DF |  | Apollon Kalamarias | Ap. Kalamarias |
| 07/1999 |  | Žarko Dragaš | MF |  | AE Lárissa | AE Lárissa |
| 07/1999 | | Dimitris Nalitzis | FW |  | Panionios GSS | Panionios |
| 07/1999 | | Georgios Zacharopoulos | FW |  | GS Kallithea | Kallithea |
| 07/1999 |  | Timo Zahnleiter | MA |  | Anagennisi Karditsa | Anagennisi Karditsa |