Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2000 |  | Modestas Stonys | GK |  | Kauno Jegeriai | Kauno Jegeriai |
| 01/2000 | | Gvidas Grigas | DF |  | Inkaras Kaunas | Inkaras Kaunas |
| 01/2000 | | Dainius Kunevičius | DF | | Kauno Jegeriai | Kauno Jegeriai |
| 01/2000 | | Vilmantas Rukavičius | DF | |||
| 01/2000 | | Darius Sanajevas | DF |  | FK Žalgiris | Žalgiris |
| 01/2000 | | Artūras Širka | DF | | Inkaras Kaunas | Inkaras Kaunas |
| 01/2000 | | Andrius Štaliūnas | DF |  | FK Ekranas | Ekranas |
| 01/2000 | | Irmantas Zelmikas | DF | | FK Žalgiris | Žalgiris |
| 01/2000 | | Saulius Butkus | MF | | Inkaras Kaunas | Inkaras Kaunas |
| 01/2000 | | Nerijus Dunauskas | MF | | Inkaras Kaunas | Inkaras Kaunas |
| 01/2000 | | Andrius Larcenka | MF | | Kauno Jegeriai | Kauno Jegeriai |
| 01/2000 | | Tomas Miklinevičius | MF | | Kauno Jegeriai | Kauno Jegeriai |
| 01/2000 | | Martynas Cikas | FW |  | FBK Kaunas | FBK Kaunas |
| 01/2000 | | Andrius Puotkalis | FW | | FK Žalgiris | Žalgiris |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2000 | | Eduardas Kurskis | GK | | FBK Kaunas | FBK Kaunas |
| 07/2000 | | Dainius Kunevičius | DF | | FBK Kaunas | FBK Kaunas |
| 07/2000 | | Irmantas Zelmikas | DF | | FBK Kaunas | FBK Kaunas |
| 07/2000 | | Nerijus Dunauskas | MF |  | FK Atlantas | Atlantas |
| 07/2000 | | Darius Maciulevičius | MF |  | Hakoah Ramat Gan | Hakoah Ramat Ga |
| 07/2000 | | Martynas Cikas | FW |  | FK Šilutė | FK Šilutė |
| 07/2000 | | Remigijus Pocius | FW | | FBK Kaunas | FBK Kaunas |
| 07/2000 | | Andrius Puotkalis | FW | | FBK Kaunas | FBK Kaunas |
| 01/2000 | | Valdemaras Martinkėnas | GK |  | FC Kuressaare | Kuressaare |
| 01/2000 | | Nerijus Barasa | DF | | FBK Kaunas | FBK Kaunas |
| 01/2000 | | Tadas Gražiūnas | DF |  | FK Rostov | FK Rostov |
| 01/2000 | | Tomas Kančelskis | DF | | FBK Kaunas | FBK Kaunas |
| 01/2000 | | Žilvinas Žudys | DF |  | FS Vágar | FSV |
| 01/2000 | | Vitalijus Daniličevas | MF | | FBK Kaunas | FBK Kaunas |
| 01/2000 | | Tomas Kavolis | MF |  | FK Šiauliai | Šiauliai |
| 01/2000 | | Arturas Fomenka | FW | | FK Rostov | FK Rostov |
| 01/2000 | | Robertas Žalys | FW |  | FK Nevėžis | FK Nevėžis |
| 01/2000 |  | Aleksandr Piskaryov | MA |  | FK Khimki | FK Khimki |