Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2006 |  | Hergen Gerdes | GK | |||
| 07/2006 | | Sebastian Mielitz | GK |  | Werder Bremen U17 | Werder U17 |
| 07/2006 | | Florian Urbainski | GK | | Werder Bremen U17 | Werder U17 |
| 07/2006 | | Sören Czyborra | DF | |||
| 07/2006 | | Dennis Diekmeier | DF | |||
| 07/2006 | | Markus Fila | DF | | Werder Bremen U17 | Werder U17 |
| 07/2006 | | Felix Schiller | DF | |||
| 07/2006 | | Philipp Bargfrede | MF | | Werder Bremen U17 | Werder U17 |
| 07/2006 | | Tobias Kempe | MF |  | Bor. Mönchengladbach U17 | M'gladbach U17 |
| 07/2006 | | Henry Sung | MF | | Werder Bremen U17 | Werder U17 |
| 07/2006 |  | Firas Tayari | MF |  | Werder Bremen II U17 | Werder U17 |
| 07/2006 |  | Andreas Granskov | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2006 |  | Edgar Kary | GK |  | VfB Oldenburg U19 | Oldenburg U19 |
| 07/2006 | | Christopher Möllering | GK |  | Werder Bremen II | Werder II |
| 07/2006 | | Tuna Sahinkaya | GK |  | Werder Bremen III | Werder III |
| 07/2006 | | Alexander Baal | DF |  | VfB Oldenburg | Oldenburg |
| 07/2006 | | Mirkan Pakkan | DF | | Werder Bremen III | Werder III |
| 07/2006 | | Sedat Yücel | DF |  | FC Oberneuland | Oberneuland |
| 07/2006 | | Benjamin Epp | MF |  | VfL Oldenburg | VfL Oldenburg |
| 07/2006 | | Sven Hassler | MF |  | Holstein Kiel II | Holst. Kiel II |
| 07/2006 | | Mattheus Wild | MF | | Werder Bremen II | Werder II |
| 07/2006 | | Torven Ziehmer | MF | | Werder Bremen II | Werder II |
| 07/2006 |  | Martin Harnik | FW |  | Werder Bremen | Werder |
| 07/2006 |  | Kadir Karabaş | FW | | Werder Bremen III | Werder III |
| 07/2006 | | Fabian Pieper | FW |  | Hansa Rostock II | Rostock II |