Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2006 |  | Kai Oswald | DF |  | Karlsruher SC | Karlsruhe |
| 01/2006 | | Nico Frommer | FW |  | Eintracht Frankfurt | E. Frankfurt |
| 01/2006 | | Christian Holzer | MF |  | 1860 Munich | 1860 Munich |
| 07/2005 | | Nicolas Feldhahn | DF |  | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2005 | | Stefan Frühbeis | DF |  | TSV 1860 München II | 1860 Mün. II |
| 07/2005 | | Florian Hörnig | DF | | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2005 | | Stefan Buck | MF |  | Bayern München II | Bayern II |
| 07/2005 | | Patrick Ghigani | MF |  | Stade Tunisien | Stade Tunisien |
| 07/2005 | | Paul Thomik | MF | | Bayern München II | Bayern II |
| 07/2005 | | Andreas Fischer | FW |  | SpVgg Bayreuth | Bayreuth |
| 07/2005 |  | Marijo Marić | FW |  | Eintracht Trier | Eintracht Trier |
| 07/2005 |  | Babacar N'Diaye | FW |  | Rot Weiss Ahlen | RW Ahlen |
| 07/2005 | | Christoph Teinert | FW |  | 1. FSV Mainz 05 | Mainz 05 |
| 07/2005 |  | Ralph Hasenhüttl | AS-CO |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2006 | | Marijo Marić | FW |  | VfR Aalen | VfR Aalen |
| 01/2006 |  | Necat Aygün | DF |  | MSV Duisburg | Duisburg |
| 07/2005 | | Dominik Haas | DF |  | TSV 1860 Rosenheim | 1860 Rosenh. |
| 07/2005 | | Norman Loose | DF |  | Erzgebirge Aue | Aue |
| 07/2005 |  | Charles Akonnor | MF |  | AC Horsens | Horsens |
| 07/2005 | | Barbaros Barut | MF |  | SpVgg Greuther Fürth | Gr. Fürth |
| 07/2005 |  | Francisco Copado | MF | | Eintracht Frankfurt | E. Frankfurt |
| 07/2005 |  | Elton da Costa | MF |  | FC Augsburg | Augsburg |
| 07/2005 |  | Goran Šukalo | MF |  | Alemannia Aachen | Aachen |
| 07/2005 | | Matthias Zimmermann | MF | | Bayern München II | Bayern II |
| 07/2005 | | İbrahim Aydemir | FW |  | Sivasspor | Sivasspor |
| 07/2005 |  | Angelo Vaccaro | FW | | FC Augsburg | Augsburg |
| 07/2005 | | Marcel von Walsleben-Schied | FW |  | Hansa Rostock | Rostock |