Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 06/2007 |  | Michal Hipp | AS-CO | |||
| 01/2007 | | Branislav Obžera | MF |  | FK Saturn | FK Saturn |
| 01/2007 | | Branislav Fodrek | FW | | FK Saturn | FK Saturn |
| 09/2006 | | Štefan Horný | MA | |||
| 07/2006 | | Karim Guédé | DF |  | Hamburger SV II | Hamburg II |
| 07/2006 |  | Jan Buryán | DF |  | FK Příbram | FK Příbram |
| 07/2006 | | Peter Čvirik | DF |  | Spartak Trnava | Spartak Trnava |
| 07/2006 | | Kornél Saláta | DF | |||
| 07/2006 | | Martin Ďurica | MF |  | FC Chiasso | FC Chiasso |
| 07/2006 | | Andrej Hanták | MF |  | Slovan Bratislava | Sl. Bratislava |
| 07/2006 | | Ján Kozák | MF |  | West Bromwich Albion | West Brom |
| 07/2006 | | Martin Maroši | MF | |||
| 07/2006 | | Patrik Mráz | MF | |||
| 07/2006 | | Jan Najman | FW | |||
| 07/2006 | | Tomáš Oravec | FW |  | Boavista | Boavista |
| 07/2006 | | Jozef Adamec | MA | | Spartak Trnava | Spartak Trnava |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 | | Kornél Saláta | DF |  | Dukla Banská Bystrica | Bystrica |
| 01/2007 | | Ľubomír Reiter | FW |  | Slavia Praha | Slavia Praha |
| 09/2006 | | Lukáš Hartig | FW |  | Sigma Olomouc | Olomouc |
| 09/2006 | | Michal Kubala | MF | | Slovan Bratislava | Sl. Bratislava |
| 07/2006 | | Dušan Sninský | MF | | Spartak Trnava | Spartak Trnava |
| 07/2006 | | Aleš Urbánek | DF | | Slavia Praha | Slavia Praha |
| 07/2006 | | Tomáš Došek | FW |  | Wisła Płock | Wisła Płock |
| 07/2006 | | Branislav Fodrek | FW | | FK Saturn | FK Saturn |