Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2006 |  | Marián Čišovský | DF |  | MŠK Žilina | Žilina |
| 01/2006 | | Michal Kubala | MF |  | AS Trenčín | AS Trenčín |
| 01/2006 | | Dušan Sninský | MF |  | Groclin Dyskobolia | Dyskobolia |
| 01/2006 |  | Tomáš Došek | FW | |||
| 01/2006 | | Juraj Piroška | FW |  | SC Freiburg U19 | Freiburg U19 |
| 01/2006 | | Ľubomír Reiter | FW |  | Chicago Fire | Chicago Fire |
| 08/2005 | | Lukáš Hartig | FW |  | Zenit St. Petersburg | Zenit |
| 08/2005 | | Peter Petráš | DF |  | Inter Bratislava | Inter Brat. |
| 07/2005 | | Juraj Halenár | FW | | Inter Bratislava | Inter Brat. |
| 07/2005 | | Ľuboš Kamenár | GK |  | Spartak Trnava | Spartak Trnava |
| 07/2005 | | Roman Konečný | DF | | Spartak Trnava | Spartak Trnava |
| 07/2005 | | Pavol Staňo | DF | | Spartak Trnava | Spartak Trnava |
| 07/2005 | | Aleš Urbánek | DF |  | Sparta Prague | Sparta Prague |
| 07/2005 | | Vratislav Gajdoš | MF |  | Slovan Bratislava | Sl. Bratislava |
| 07/2005 | | Gábor Straka | MF |  | FC DAC 1904 | DAC 1904 |
| 07/2005 |  | Fabio Gomes | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2006 | | Branislav Obžera | MF |  | FK Saturn | FK Saturn |
| 02/2006 | | Peter Petráš | DF | | FK Saturn | FK Saturn |
| 02/2006 | | Vladimir Weiss | MA | | FK Saturn | FK Saturn |
| 01/2006 | | Ján Kozák | MF |  | West Bromwich Albion | West Brom |
| 01/2006 | | Ján Ďurica | DF | | FK Saturn | FK Saturn |
| 01/2006 | | Balazs Borbely | MF |  | 1. FC Kaiserslautern | K'lautern |
| 01/2006 | | Jozef Kotula | MF | | Spartak Trnava | Spartak Trnava |
| 01/2006 |  | Milorad Bukvić | FW |  | FC Vaslui | FC Vaslui |
| 01/2006 | | Anton Šoltís | FW |  | MFK Dubnica | MFK Dubnica |
| 01/2006 | | Blažej Vaščák | FW |  | ACD Treviso | Treviso |
| 07/2005 | | Štefan Maixner | DF |  | Zlaté Moravce | Zlaté Moravce |
| 07/2005 | | Andrej Hanták | MF | | Slovan Bratislava | Sl. Bratislava |
| 07/2005 | | Róbert Novák | MF | | MFK Dubnica | MFK Dubnica |
| 07/2005 | | Filip Šebo | FW |  | Austria Wien | Austria Wien |