Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 05/2013 |  | Takis Lemonis | MA | |||
| 04/2013 | | Giorgios Peppas | MF | |||
| 03/2013 |  | Jasminko Velić | MA | |||
| 02/2013 |  | Juanmi Callejón | MF |  | Hércules CF | Hércules |
| 01/2013 |  | Olivier Boumal | MF |  | Astra Giurgiu | Astra |
| 01/2013 | | Paraskevas Zannias | DF | |||
| 09/2012 |  | Almir | MF | |||
| 07/2012 | | Alexandros Kasmeridis | GK |  | Thrasyvoulos Fylis | Thrasyvoulos Fylis |
| 07/2012 | | Panagiotis Tsintotas | GK |  | Pierikos Katerini | Pierikos Katerini |
| 07/2012 | | Georgios Georgiou | DF |  | OFI Heraklion | OFI |
| 07/2012 | | Josemi | DF |  | FC Cartagena | Cartagena |
| 07/2012 | | Konstantinos Manolas | DF | | Thrasyvoulos Fylis | Thrasyvoulos Fylis |
| 07/2012 | | Noé Acosta | MF |  | Aris Saloniki | Aris Saloniki |
| 07/2012 | | Rogério Martins | MF |  | Asteras Tripolis | Asteras |
| 07/2012 | | Romeu | MF |  | AE Lárissa | AE Lárissa |
| 07/2012 | | Vangelis Karamatsoukis | FW | |||
| 07/2012 |  | Kristijan Miljević | FW |  | Brescia Calcio U19 | Brescia Calcio U19 |
| 07/2012 |  | Mauro Poy | FW |  | Xanthi FC | Xhanti FC |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2013 |  | Stefano Napoleoni | MF |  | Atromitos | Atromitos |
| 10/2012 |  | Thierry Zahui | MF |  | Norrby IF | Norrby IF |
| 07/2012 | | Alexandros Paschalakis | GK |  | PAEEK | PAEEK |
| 07/2012 | | Kyriakos Stratilatis | GK |  | AO Kerkyra | AO Kerkyra |
| 07/2012 | | Ioannis Alexiou | DF |  | KFC Uerdingen 05 | Uerdingen |
| 07/2012 | | Dimitrios Ioannou | DF |  | Pafos FC | Pafos FC |
| 07/2012 |  | Mano | DF |  | GD Estoril | Estoril |
| 07/2012 |  | Xavier Tomas | DF |  | Tours FC | Tours FC |
| 07/2012 | | Chumbinho | MF | | Atromitos | Atromitos |
| 07/2012 | | Lucas Favalli | MF |  | Panetolikos | Panetolikos |
| 07/2012 |  | Petar Grbić | MF |  | Olympiacos FC | Olympiacos FC |
| 07/2012 | | Dimitris Kiliaras | MF | | Pafos FC | Pafos FC |
| 07/2012 | | Paschalis Melissas | MF | | Pafos FC | Pafos FC |
| 07/2012 |  | Agustín Viana | MF |  | Bella Vista | Bella Vista |
| 07/2012 | | Dimitrios Papadopoulos | FW |  | Panthrakikos | Panthrakikos |
| 07/2012 |  | Zdravko Popović | FW |  | Simurq PFC | Simurq |