Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 11/2013 |  | Herol Riiberg | MF | |||
| 09/2013 |  | Lamin Suma | MF | |||
| 07/2013 | | Kevin Aloe | DF |  | FC Flora II | FC Flora II |
| 07/2013 | | German Šlein | MF | |||
| 07/2013 |  | Guram Mikadze | FW | |||
| 06/2013 | | Stanislav Pedõk | GK |  | JK Narva Trans | Narva Trans |
| 04/2013 | | Brent Lepistu | MF | | FC Flora II | FC Flora II |
| 03/2013 |  | Seka Adou | FW |  | Jeunesse Club Abidjan | Jeunesse Club Abidjan |
| 02/2013 | | Marko Meerits | GK |  | Vitesse | Vitesse |
| 02/2013 |  | Sander van de Streek | MF | | Vitesse | Vitesse |
| 01/2013 | | Siim-Sten Palm | GK |  | FC Viljandi | FC Viljandi |
| 01/2013 | | Martin Kase | DF |  | JK Tallinna Kalev | Kalev Tallinn |
| 01/2013 | | Johannes Kukebal | DF | | JK Tallinna Kalev | Kalev Tallinn |
| 01/2013 | | Marten Mütt | DF | | FC Viljandi | FC Viljandi |
| 01/2013 | | Märten Pajunurm | DF |  | FC Kuressaare | Kuressaare |
| 01/2013 | | Ragnar Piir | DF | | FC Flora II | FC Flora II |
| 01/2013 | | Maksim Gussev | MF | | JK Tallinna Kalev | Kalev Tallinn |
| 01/2013 | | Rando Leokin | MF | |||
| 01/2013 | | Rauno Sappinen | MF | | FC Flora II | FC Flora II |
| 01/2013 |  | Irakli Logua | FW | |||
| 01/2013 | | Sander Post | FW |  | Aalesunds FK | Aalesunds FK |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 08/2013 | | Marko Meerits | GK | | Vitesse | Vitesse |
| 07/2013 | | Märten Pajunurm | DF | | FC Kuressaare | Kuressaare |
| 07/2013 | | Karl Mööl | MF | | FC Kuressaare | Kuressaare |
| 02/2013 | | Siim-Sten Palm | GK | | FC Kuressaare | Kuressaare |
| 01/2013 | | Stanislav Pedõk | GK | | JK Narva Trans | Narva Trans |
| 01/2013 | | Aleksei Jahhimovitš | DF |  | FCI Levadia | Levadia |
| 01/2013 | | Juri Gavrilov | MF | | FC Kuressaare | Kuressaare |
| 01/2013 | | Nikolai Mašitšev | MF |  | JK Sillamäe Kalev | Sillamäe Kalev |
| 01/2013 | | Siim Luts | FW |  | IFK Norrköping | IFK Norrköping |
| 01/2013 | | Martti Pukk | FW | | FC Kuressaare | Kuressaare |