Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2006 |  | Iulian Bursuc | MF |  | Nistru Otaci | Nistru Otaci |
| 07/2006 | | Anatoli Ostap | MF |  | FK Mash'al Muborak | FK Mash'al Muborak |
| 01/2006 |  | Marius Rapalis | GK |  | REO Vilnius | REO Vilnius |
| 01/2006 | | Gerdas Aleksa | DF |  | FK Sūduva | FK Sūduva |
| 01/2006 | | Kestutis Deveika | DF |  | FK Atlantas | Atlantas |
| 01/2006 | | Marius Kazlauskas | DF |  | FK Vilnius | FK Vilnius |
| 01/2006 | | Marijus Krukovski | DF | |||
| 01/2006 | | Edgaras Rukstele | DF | |||
| 01/2006 | | Arturas Zekonis | DF | |||
| 01/2006 | | Arturas Stesko | MF |  | FK Vetra | FK Vetra |
| 01/2006 | | Igoris Stesko | MF | | FK Vetra | FK Vetra |
| 01/2006 | | Raimondas Vilėniškis | MF |  | Radomiak Radom | Radomiak Radom |
| 01/2006 | | Tadas Labukas | FW |  | Vyzas FC | Vyzas FC |
| 01/2006 | | Valerijus Mižigurskis | FW |  | FK Ekranas | Ekranas |
| 01/2006 | | Eimantas Poderis | FW |  | FBK Kaunas | FBK Kaunas |
| 01/2006 | | Andrius Puotkalis | FW | | FBK Kaunas | FBK Kaunas |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2006 | | Mindaugas Malinauskas | GK | | FBK Kaunas | FBK Kaunas |
| 01/2006 | | Valentin Baranovskij | DF | | FK Vetra | FK Vetra |
| 01/2006 | | Andrius Jokšas | DF |  | Tavriya Simferopol (1958-2014) | Tavriya |
| 01/2006 | | Tomas Mikuckis | DF | | FK Sūduva | FK Sūduva |
| 01/2006 | | Marius Bezykornovas | MF |  | FK Nevėžis | FK Nevėžis |
| 01/2006 | | Karolis Jasaitis | MF | | FK Sūduva | FK Sūduva |
| 01/2006 |  | Andrei Shylo | MF |  | Veras Nesvizh | Veras Nesvizh |
| 01/2006 | | Martynas Karalius | FW | | FK Atlantas | Atlantas |