Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2006 |  | Maksut Azizi | FW |  | Rudar Velenje | Rudar Velenje |
| 01/2006 |  | Mirza Merlani | GK |  | WIT Georgia | WIT Georgia |
| 01/2006 |  | Vaidas Žutautas | GK |  | FK Sūduva | FK Sūduva |
| 01/2006 | | Marius Babravicius | DF | |||
| 01/2006 |  | Olegs Baikovs | DF |  | FK Rīga | FK Rīga |
| 01/2006 | | Valentin Baranovskij | DF |  | FK Žalgiris | Žalgiris |
| 01/2006 | | Algis Jankauskas | DF |  | FK Amkar Perm | Amkar Perm |
| 01/2006 |  | Aleksandr Psenicnikov | DF | |||
| 01/2006 | | Andrey Usachev | DF | |||
| 01/2006 |  | Bobi Božinovski | MF |  | Cementarnica Skopje | Cementarnica |
| 01/2006 | | Dejan Milosevski | MF | | Cementarnica Skopje | Cementarnica |
| 01/2006 | | Konstantin Talanchev | MF | |||
| 01/2006 | | Donatas Vencevičius | MF |  | GIF Sundsvall | GIF Sundsvall |
| 01/2006 | | Vidas Dančenko | FW |  | Babrungas Plungė | Babrungas |
| 01/2006 | | Rolandas Karcemarskas | FW | |||
| 01/2006 |  | Sergey Kuznetsov | FW |  | FC Sheriff | Sheriff |
| 01/2006 | | German Lovchev | FW | |||
| 01/2006 | | Vytautas Jančiauskas | MA |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2006 | | Žydrūnas Grudzinskas | DF |  | FK Vilnius | FK Vilnius |
| 01/2006 |  | Alexei Borovski | MF |  | Dinamo Brest | Dinamo Brest |
| 01/2006 | | Janis Rinkus | MF |  | FC Daugava | FC Daugava |
| 01/2006 | | Arturas Stesko | MF | | FK Žalgiris | Žalgiris |
| 01/2006 | | Igoris Stesko | MF | | FK Žalgiris | Žalgiris |
| 01/2006 | | Nerijus Vasiliauskas | FW |  | Tavriya Simferopol (1958-2014) | Tavriya |