Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2009 |  | Štěpán Kučera | DF |  | Sparta Prague | Sparta Prague |
| 01/2009 | | Miroslav Hozda | DF |  | FK Dukla Praha | Dukla Praha |
| 01/2009 | | Tomáš Čížek | MF |  | FK Moskva | FK Moskva |
| 01/2009 |  | Michal Farkaš | MF |  | FC Nitra | FC Nitra |
| 01/2009 | | Pavel Černý | FW |  | FC Hradec Králové | Hradec Králové |
| 07/2008 | | David Lafata | FW |  | Austria Wien | Austria Wien |
| 07/2008 | | Andrej Hesek | FW |  | FK Teplice | FK Teplice |
| 07/2008 | | Ondřej Bočok | GK | |||
| 07/2008 | | Lukáš Zich | GK |  | Bohemians Praha 1905 | Bohemians |
| 07/2008 | | Petr Pavlík | DF |  | FC Zbrojovka Brno | Zbrojovka Brno |
| 07/2008 | | Jan Šisler | DF |  | FK Jablonec B | FK Jablonec B |
| 07/2008 | | Jan Rathouz | MF | |||
| 07/2008 | | Vlastimil Stožický | MF |  | FK Baník Most | Baník Most |
| 07/2008 | | Daniel Kocourek | FW | |||
| 07/2008 |  | Muris Mešanović | FW | |||
| 07/2008 |  | Milan Vukovič | FW |  | Slavia Praha B | Slavia Praha B |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 04/2009 | | Tomáš Čížek | MF |  | Spartak Vladikavkaz | Spartak |
| 02/2009 | | Tomáš Huber | DF | | Sparta Prague | Sparta Prague |
| 02/2009 | | Daniel Kocourek | FW |  | FK Čáslav | FK Čáslav |
| 01/2009 | | Igor Žofčák | MF | | Sparta Prague | Sparta Prague |
| 01/2009 | | Lukáš Fujerik | FW |  | 1. FC Slovácko | 1. FC Slovácko |
| 01/2009 | | Andrej Hesek | FW | | FK Teplice | FK Teplice |
| 08/2008 | | Vlastimil Stožický | MF | | FK Teplice | FK Teplice |
| 07/2008 | | Jiří Bobok | GK |  | AEK Larnaca | AEK Larnaca |
| 07/2008 | | Milan Fukal | DF |  | Kapfenberger SV 1919 | Kapfenberger SV |
| 07/2008 | | Miroslav Baránek | FW |  | FC Admira Wacker | Admira Wacker |
| 07/2008 | | Tomáš Necid | FW |  | Slavia Praha | Slavia Praha |
| 07/2008 | | Dušan Nulíček | FW | | FK Čáslav | FK Čáslav |
| 07/2008 | | Pavol Straka | FW |  | Antalyaspor | Antalyaspor |
| 07/2008 | | Jan Vošahlík | FW |  | Bohemians Praha | Bohemians Praha |