Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 06/2009 |  | Dominik Spalt | DF | |||
| 02/2009 |  | Stefán Þórðarson | FW | |||
| 02/2009 |  | Dietmar Schacht | AS-CO | |||
| 01/2009 | | Tobias Nickenig | DF |  | 1. FC Köln | Köln |
| 01/2009 |  | Eugène Dadi | FW |  | Perth Glory | Perth Glory |
| 01/2009 | | Thorsten Kirschbaum | GK |  | TSG Hoffenheim | Hoffenheim |
| 01/2009 |  | Mark Rudan | DF |  | Avispa Fukuoka | Avispa |
| 01/2009 | | Gunnleifur Gunnleifsson | GK |  | HK Kópavogur | HK |
| 01/2009 | | Guðmundur Steinarsson | FW |  | Keflavík ÍF | Keflavík |
| 01/2009 | | Robert Jaspert | AS-CO | |||
| 11/2008 | | Pierre Littbarski | MA | |||
| 09/2008 |  | Stephan Lehmann | GK-CO | |||
| 08/2008 |  | Haman Sadjo | DF |  | Újpest FC | Újpest FC |
| 08/2008 |  | Daniel Břežný | MF | |||
| 08/2008 | | Murat Ural | FW |  | FC St. Gallen | St.Gallen |
| 07/2008 |  | Rivaldo | MF |  | Bahia - BA | Bahia |
| 07/2008 |  | Orkan Avci | GK |  | FC Basel 1893 II | FC Basel II |
| 07/2008 | | Stefan Iten | DF |  | FC Wohlen | FC Wohlen |
| 07/2008 | | Damián Bellón | MF |  | Aston Villa (R) | Aston Villa (R) |
| 07/2008 |  | Sehar Fejzulahi | MF |  | FC Winterthur | FC Winterthur |
| 07/2008 | | Márcio Senna | MF | |||
| 07/2008 |  | Miguel Vitali | MF |  | UA Maracaibo | UA Maracaibo |
| 07/2008 |  | Fakhreddine Galbi | FW |  | US Monastir | USM |
| 07/2008 | | Willian Sarôa | FW | |||
| 07/2008 |  | Vittorio Caruso | AS-CO |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 05/2009 | | Eugène Dadi | FW | | Perth Glory | Perth Glory |
| 02/2009 | | Murat Ural | FW |  | Servette FC | Servette |
| 01/2009 | | Gabriel Wüthrich | GK |  | FC Carl Zeiss Jena | Jena |
| 01/2009 | | Diren Akdemir | DF |  | FC Wil 1900 | FC Wil |
| 01/2009 | | Tim Grossklaus | FW | | FC Wil 1900 | FC Wil |
| 01/2009 | | Yann Sommer | GK |  | FC Basel 1893 | FC Basel |
| 01/2009 | | Stephan Lehmann | GK-CO | | FC Carl Zeiss Jena | Jena |
| 08/2008 |  | Julio Bevacqua | FW |  | Panthrakikos | Panthrakikos |
| 07/2008 |  | Florian Sturm | MF |  | Milton Keynes Dons | Milton Keynes |
| 07/2008 | | Giuseppe Aquaro | DF |  | FC Aarau | FC Aarau |
| 07/2008 | | Jamie Harnwell | DF | | Perth Glory | Perth Glory |
| 07/2008 | | Michele Maggetti | MF |  | FC Lugano | FC Lugano |
| 07/2008 | | Raphael Rohrer | MF |  | USV Eschen/Mauren | USV Eschen/Maur |
| 07/2008 | | Marius Zarn | MF |  | Chur 97 | Chur 97 |
| 07/2008 |  | Gonzalo Pizzichillo | FW |  | Montevideo Wanderers | Wanderers |