Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2007 |  | Marius Zarn | MF |  | FC Aarau | FC Aarau |
| 02/2007 |  | Artim Shakiri | MF |  | Inter Turku | Inter Turku |
| 02/2007 |  | Michele Polverino | MF | |||
| 01/2007 |  | Hans-Joachim Weller | MA | |||
| 01/2007 | | Sandro Marini | MF |  | FC St. Gallen | St.Gallen |
| 09/2006 |  | Claude Gnakpa | DF |  | Swindon Town | Swindon Town |
| 09/2006 |  | Miguel Portillo | DF |  | BSC Young Boys | Young Boys |
| 07/2006 | | Gabriel Wüthrich | GK | | FC St. Gallen | St.Gallen |
| 07/2006 | | Javier López | DF |  | Aldosivi | CA Aldosivi |
| 07/2006 | | Thomas Reinmann | DF | |||
| 07/2006 | | Guillermo Alastra | MF |  | San Martín de Mendoza | San Martín |
| 07/2006 |  | Yohann Langlet | MF |  | FC Baulmes | FC Baulmes |
| 07/2006 |  | Anatoliy Ponomarev | MF |  | Kalmar FF | Kalmar FF |
| 07/2006 |  | Florian Sturm | MF |  | FC Wacker Innsbruck | W. Innsbruck |
| 07/2006 | | Bruno Sutter | MF | | FC St. Gallen | St.Gallen |
| 07/2006 | | Christian Wieczorek | MF |  | Arminia Bielefeld | Bielefeld |
| 07/2006 |  | Pape Omar Faye | FW |  | FC Thun Berner Oberland | FC Thun |
| 07/2006 |  | Maurizio Jacobacci | MA |  | FC Wil 1900 | FC Wil |
| 07/2006 | | Michael Koller | AS-CO |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 | | Claude Gnakpa | DF | | Swindon Town | Swindon Town |
| 01/2007 | | Juan Manuel Sara | FW |  | Gallipoli | Gallipoli |
| 08/2006 |  | Gabriel Urdaneta | MF |  | UA Maracaibo | UA Maracaibo |
| 07/2006 | | Swen König | GK |  | FC Wohlen | FC Wohlen |
| 07/2006 | | Fabio D'Elia | DF |  | USV Eschen/Mauren | USV Eschen/Maur |
| 07/2006 | | Reto Mündle | DF |  | FC Schaan | FC Schaan |
| 07/2006 |  | Rahim Shala | DF | | FC Baulmes | FC Baulmes |
| 07/2006 | | Martin Stocklasa | DF |  | Dynamo Dresden | Dresden |
| 07/2006 | | Martin Büchel | MF |  | FC Zürich | FC Zürich |
| 07/2006 | | Sandro Burki | MF | | FC Aarau | FC Aarau |
| 07/2006 |  | Patrik Gedeon | MF |  | Wisła Płock | Wisła Płock |
| 07/2006 | | Andreas Gerster | MF |  | TSV Hartberg | TSV Hartberg |
| 07/2006 | | Marco Pérez | MF |  | SC Eisenstadt | SC Eisenstadt |
| 07/2006 | | Martin Telser | MF |  | FC Balzers | FC Balzers |
| 07/2006 | | Marius Zarn | MF | | FC Aarau | FC Aarau |
| 07/2006 | | Goran Antic | FW | | FC Aarau | FC Aarau |