Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 |  | Maksim Paponov | MF |  | Lokomotiv 2012 Mezdra | Lokomotiv 2012 Mezdra |
| 07/2008 | | Eduard Ratnikov | MF |  | Irtysh Pavlodar | Irtysh Pavlodar |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 | | Daniil Savitski | GK |  | JK Nõmme Kalju | Nõmme Kalju |
| 01/2009 | | Vitali Teleš | GK |  | Viimsi JK | Viimsi JK |
| 01/2009 | | Markus Jürgenson | DF |  | FC Flora | Flora |
| 01/2009 | | Dmitri Kovtunovitš | DF |  | JK Nõmme Kalju II | Nõmme Kalju II |
| 01/2009 | | Henri Külm | DF |  | JK Tallinna Kalev | Kalev Tallinn |
| 01/2009 | | Aleksandr Volodin | DF |  | FK Vetra | FK Vetra |
| 01/2009 | | Aivar Anniste | MF | | FC Flora | Flora |
| 01/2009 | | Kert Haavistu | MF |  | Puuma Tallinn | Puuma Tallinn |
| 01/2009 |  | Nikolai Mašitšev | MF | | FK Vetra | FK Vetra |
| 01/2009 | | Eduard Ratnikov | MF |  | JK Narva Trans | Narva Trans |
| 01/2009 | | Sergei Terehhov | MF | | JK Nõmme Kalju | Nõmme Kalju |
| 01/2009 | | Priidu Ahven | FW | | JK Tallinna Kalev | Kalev Tallinn |
| 01/2009 | | Artjom Dmitrijev | FW | | FK Vetra | FK Vetra |
| 01/2009 | | Sergei Jegorov | FW |  | JK Sillamäe Kalev | Sillamäe Kalev |
| 01/2009 | | Oliver Konsa | FW | | FC Flora | Flora |
| 01/2009 | | Anatoli Novozilov | FW |  | Jõhvi FC Phoenix | Jõhvi FC Phoenix |
| 01/2009 | | Daniil Ratnikov | FW | | JK Narva Trans | Narva Trans |
| 01/2009 | | Sergei Ratnikov | MA | | JK Narva Trans | Narva Trans |
| 07/2008 | | Ilja Kassjantsuk | GK | | JK Narva Trans | Narva Trans |