Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2012 |  | Nikolaos Kechagias | MA | |||
| 01/2012 | | Panagiotis Vosniadis | GK |  | Anagennisi Giannitsa | Anagennisi Giannitsa |
| 01/2012 | | Antonis Tsiaras | MF | |||
| 01/2012 |  | Božidar Bandović | MA | |||
| 01/2012 | | Nikos Kotsovos | MA | |||
| 01/2012 | | Alexandros Galitsios | DF | |||
| 01/2012 | | Manolis Psomas | DF | |||
| 01/2012 |  | Yohann Lasimant | FW | |||
| 09/2011 | | Nikos Gkoulios | GK-CO | |||
| 07/2011 | | Chrysostomos Michailidis | GK |  | Atromitos | Atromitos |
| 07/2011 |  | Naïm Aarab | DF |  | Sporting Charleroi | Charleroi SC |
| 07/2011 | | Lazaros Fotias | DF |  | Pontion Katerinis | Pontion Katerinis |
| 07/2011 | | Cyril Kali | DF |  | Veria FC | Veria FC |
| 07/2011 | | Athanasios Papageorgiou | DF |  | Pierikos Katerini | Pierikos Katerini |
| 07/2011 |  | Boa Morte | MF |  | West Ham United | West Ham |
| 07/2011 | | Kostas Chatzis | MF | | Pierikos Katerini | Pierikos Katerini |
| 07/2011 |  | Toni González | MF |  | Doxa Dramas FC | Doxa Dramas FC |
| 07/2011 | | Zéquinha | FW |  | CD Fátima | CD Fátima |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2012 | | Ibrahim Tall | DF |  | FC Lausanne-Sport | FC Lausanne |
| 02/2012 |  | Geremi Njitap | MF |  | FK Ohrid | FK Ohrid |
| 01/2012 |  | Sanel Kuljić | FW |  | Kapfenberger SV 1919 | Kapfenberger SV |
| 01/2012 | | Chrysostomos Michailidis | GK |  | Panionios GSS | Panionios |
| 01/2012 | | Boa Morte | MF |  | Orlando Pirates | Orlando Pirates |
| 01/2012 |  | Matías Iglesias | MF | | Atromitos | Atromitos |
| 01/2012 |  | Joël Tshibamba | FW |  | Krylia Sovetov | Krylia Sovetov |
| 08/2011 | | Stathis Tavlaridis | DF |  | OFI Heraklion | OFI |
| 08/2011 | | Vasilios Rentzas | MF |  | Ergotelis | Ergotelis |
| 07/2011 |  | Kamil Čontofalský | GK |  | Slavia Praha | Slavia Praha |
| 07/2011 | | Christos Melissis | DF |  | Panathinaikos A.O. | Panathinaikos |
| 07/2011 | | Theodoros Tripotseris | DF | | Doxa Dramas FC | Doxa Dramas FC |
| 07/2011 |  | Mohammed Abubakari | MF | | Doxa Dramas FC | Doxa Dramas FC |
| 07/2011 |  | Tümer Metin | MF |  | AO Kerkyra | AO Kerkyra |
| 07/2011 | | Aleksandar Simić | MF |  | OFK Beograd | OFK Beograd |
| 07/2011 |  | Jan Blažek | FW |  | Slovan Liberec | Sl. Liberec |
| 07/2011 |  | Stephen Makinwa | FW |  | Lazio Roma | Lazio |
| 07/2011 | | Fabrice Pancrate | FW |  | FC Nantes | FC Nantes |