Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 |  | Filipe da Costa | MF |  | Ionikos Nikea | Ionikos |
| 01/2007 |  | Henry Antchouet | FW |  | Al Shabab Al Arabi | Al Shabab |
| 01/2007 |  | Jozef Kožlej | FW |  | Anorthosis Famagusta | Anorthosis |
| 07/2006 |  | Stefanos Skentos | DF | |||
| 07/2006 | | Spiros Vallas | DF |  | Olympiacos FC | Olympiacos FC |
| 07/2006 | | Stylianos Venetidis | DF | | Olympiacos FC | Olympiacos FC |
| 07/2006 | | Anastasios Venetis | DF |  | GS Kallithea | Kallithea |
| 07/2006 | | Dimitrios Balis | MF | |||
| 07/2006 |  | Christian Bassila | MF |  | Sunderland AFC | Sunderland |
| 07/2006 |  | Cleyton | MF |  | Apollon Kalamarias | Ap. Kalamarias |
| 07/2006 | | Georgios Fotakis | MF |  | Kilmarnock FC | Kilmarnock |
| 07/2006 |  | Nektarios Alexandrou | FW |  | APOEL Nikosia | APOEL |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 | | Ioannis Chloros | FW |  | AEP Iraklis FC | Iraklis |
| 01/2007 | | Evangelos Stournaras | DF |  | Nea Salamina | Nea Salamina |
| 07/2006 | | Christos Lambakis | GK |  | AEL Limassol | AEL Limassol |
| 07/2006 | | Georgios Pasios | DF |  | AO Kerkyra | AO Kerkyra |
| 07/2006 | | Georgios Simos | DF |  | AEK Larnaca | AEK Larnaca |
| 07/2006 | | Junior Vela | MF | | Apollon Kalamarias | Ap. Kalamarias |
| 07/2006 |  | Ivan Nedeljković | MF |  | AO Egaleo | AO Egaleo |
| 07/2006 | | Athanasios Palaiologos | MF |  | Ethnikos Asteras | Ethnikos Asteras |
| 07/2006 |  | Dennis Șerban | MF |  | FC Dinamo Bucureşti | Dinamo Bucurest |
| 07/2006 | | Slađan Spasić | MF |  | Olympiakos Nikosia | Olymp. Nikosia |
| 07/2006 |  | Dawid Jarka | FW |  | Górnik Zabrze | Górnik Zabrze |