Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 |  | Darko Miladin | MF |  | Hajduk Split | Hajduk |
| 01/2007 |  | Perica Ognjenović | FW |  | Selangor MK Land | Selangor MK Land |
| 07/2006 |  | Iosif Daskalakis | GK |  | OFI Heraklion | OFI |
| 07/2006 | | Nikos Soumoulidis | GK | |||
| 07/2006 |  | Mistletoe Boyele | DF | |||
| 07/2006 |  | Mario Hieblinger | DF |  | Grazer AK | Grazer AK |
| 07/2006 | | Konstantinos Stavrakakis | DF | | OFI Heraklion | OFI |
| 07/2006 | | Nikolaos Zapropoulos | DF |  | Anorthosis Famagusta | Anorthosis |
| 07/2006 |  | Miroslav Barčík | MF |  | MŠK Žilina | Žilina |
| 07/2006 | | Guy Bwele | MF | |||
| 07/2006 | | Michalis Fragoulakis | MF | |||
| 07/2006 |  | Altin Haxhi | MF | | Anorthosis Famagusta | Anorthosis |
| 07/2006 |  | Júnior | MF |  | Paços de Ferreira | Ferreira |
| 07/2006 | | Manolis Kastrinos | MF | |||
| 07/2006 |  | Kenedy | MF |  | APOEL Nikosia | APOEL |
| 07/2006 | | Stefanos Maselis | MF | |||
| 07/2006 | | Paschalis Melissas | MF |  | Xanthi FC | Xhanti FC |
| 07/2006 | | Dimitris Skouloudis | MF | |||
| 07/2006 | | Ivan Tasić | MF |  | PS Kalamata | Kalamata |
| 07/2006 | | Mario Budimir | FW | | Hajduk Split | Hajduk |
| 07/2006 |  | Oleg Iachtchouk | FW |  | RSC Anderlecht | Anderlecht |
| 07/2006 | | Alexandros Kaklamanos | FW | | APOEL Nikosia | APOEL |
| 07/2006 | | Tasos Thanos | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2006 |  | Georgi Markov | DF |  | Lokomotiv Sofia | Lokomotiv Sf |
| 07/2006 |  | De Pedro | MF |  | Burgos CF | Burgos CF |
| 07/2006 |  | Béla Kovács | MF |  | Alki Larnaca | Alki Larnaca |
| 07/2006 |  | Lucian Pârvu | FW |  | FC Universitatea Craiova | Uni. Craiova |
| 07/2006 |  | Patrick Zoundi | FW |  | Asteras Tripolis | Asteras |