Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 |  | Samuel Koejoe | FW | |||
| 01/2007 |  | Cataldo Cozza | DF |  | SC Paderborn 07 II | SC Paderborn 07 II |
| 01/2007 | | Stefan Süß | MF |  | Dynamo Dresden II | D. Dresden II |
| 10/2006 | | Sebastian Pelzer | DF | |||
| 09/2006 | | Norbert Meier | MA | |||
| 08/2006 |  | Alen Orman | DF | |||
| 08/2006 | | Markus Dworrak | MF |  | Energie Cottbus | Cottbus |
| 07/2006 | | Tino Berbig | GK |  | VfL Osnabrück | Osnabrück |
| 07/2006 | | Daniel Ernemann | DF |  | Austria Lustenau | A. Lustenau |
| 07/2006 | | Jan Koch | DF |  | Hansa Rostock II | Rostock II |
| 07/2006 | | Paul Schletzke | DF | | Dynamo Dresden II | D. Dresden II |
| 07/2006 |  | Martin Stocklasa | DF |  | FC Vaduz | FC Vaduz |
| 07/2006 | | Ronald Wolf | DF | | Dynamo Dresden II | D. Dresden II |
| 07/2006 | | Markus Knackmuß | MF |  | FC Augsburg | Augsburg |
| 07/2006 | | Michael Kügler | MF | | VfL Osnabrück | Osnabrück |
| 07/2006 |  | Pavel David | FW |  | Rot-Weiß Erfurt | Erfurt |
| 07/2006 | | André Heinisch | FW | |||
| 07/2006 | | Patrick Würll | FW |  | Holstein Kiel | Holstein Kiel |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 | | Robert Scannewin | DF |  | ZFC Meuselwitz | Meuselwitz |
| 01/2007 | | André Heinisch | FW |  | VFC Plauen | VFC Plauen |
| 09/2006 | | Peter Pacult | MA |  | Rapid Vienna | Rapid Vienna |
| 07/2006 |  | Darko Horvat | GK | | Dynamo Dresden II | D. Dresden II |
| 07/2006 | | Ignjac Kresic | GK |  | Kickers Offenbach | Offenbach |
| 07/2006 |  | Dennis Cagara | DF |  | Hertha BSC | Hertha BSC |
| 07/2006 | | Dexter Langen | DF |  | Hansa Rostock | Rostock |
| 07/2006 | | Pavel Pergl | DF |  | Sparta Prague | Sparta Prague |
| 07/2006 | | Silvio Bär | MF |  | MSV 1919 Neuruppin | MSV Neuruppin |
| 07/2006 | | Christian Fröhlich | MF |  | FC Carl Zeiss Jena | Jena |
| 07/2006 |  | Mariusz Kukiełka | MF | | Energie Cottbus | Cottbus |
| 07/2006 | | Karsten Oswald | MF |  | SG Sachsen Leipzig | Sachsen Leip. |
| 07/2006 | | Maik Wagefeld | MF | | Hansa Rostock | Rostock |
| 07/2006 | | Thomas Bröker | FW |  | SC Paderborn 07 | Paderborn |
| 07/2006 |  | Joshua Kennedy | FW |  | 1. FC Nuremberg | Nuremberg |
| 07/2006 | | Thomas Neubert | FW | | Holstein Kiel | Holstein Kiel |