Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2000 |  | Cor Pot | MA | |||
| 01/2000 |  | Thomas Gerstner | MF |  | FC Carl Zeiss Jena | Jena |
| 12/1999 |  | Veselin Popović | FW |  | FSV Zwickau | FSV Zwickau |
| 11/1999 |  | Ninoslav Milenković | DF |  | B36 Tórshavn | B36 |
| 09/1999 | | Daniel Petrowsky | MF |  | 1. FC Union Berlin | Union Berlin |
| 07/1999 | | Dietmar Hummel | GK |  | SC Freiburg | Freiburg |
| 07/1999 |  | Ignjac Kresic | GK |  | SV Darmstadt 98 | Darmstadt |
| 07/1999 |  | Branislav Bulatovic | DF |  | Dresdner SC | Dresdner SC |
| 07/1999 | | Benjamin Lense | DF | |||
| 07/1999 | | Frank Paulus | DF |  | 1. FC Köln II | Köln II |
| 07/1999 | | Uwe Wolf | DF |  | RB Salzburg | RB Salzburg |
| 07/1999 | | Lars Jungnickel | MF |  | Dynamo Dresden U19 | Dynamo Dresden U19 |
| 07/1999 | | Sascha Lense | MF |  | SpVgg Unterhaching | U'haching |
| 07/1999 | | Carsten Paulick | MF | |||
| 07/1999 | | Maik Wagefeld | MF | |||
| 07/1999 | | Marco Weller | MF |  | 1. FC Köln | Köln |
| 07/1999 |  | Fernando Nogueira | FW | |||
| 07/1999 | | Velibor Kopunović | FW |  | Vác FC | Vác FC |
| 07/1999 | | Vladimir Manislavic | FW |  | Crvena Zvezda | Crv. Zvezda |
| 07/1999 | | Sebastian Müller | FW |  | SV Babelsberg 03 | Babelsberg |
| 07/1999 | | Goran Skeledžić | FW | | SV Darmstadt 98 | Darmstadt |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/1999 | | Boris Jovanovic | GK |  | SC Borea Dresden | SC Borea |
| 07/1999 | | Thomas Köhler | GK |  | Energie Cottbus | Cottbus |
| 07/1999 | | Marcus Claus | DF |  | FC Einheit Rudolstadt | Rudolstadt |
| 07/1999 | | Jens Reckmann | DF |  | BFC Dynamo | BFC Dynamo |
| 07/1999 | | Daniel Rosin | DF |  | Bayern München II | Bayern II |
| 07/1999 | | Stefan Bernhardt | MF |  | TSV 1860 München II | 1860 Mün. II |
| 07/1999 | | Robert Kovačić | MF |  | Wuppertaler SV | Wuppertal |
| 07/1999 | | Kai Metzner | MF |  | 1. FC Lok Leipzig | Lok Leipzig |
| 07/1999 | | Sascha Schönfeld | MF |  | VFC Plauen | VFC Plauen |
| 07/1999 | | Falk Terjek | MF |  | VfR Mannheim | VfR Mannheim |
| 07/1999 |  | Gabor Nagy | FW |  | Rot-Weiß Erfurt | Erfurt |
| 07/1999 | | Nico Patschinski | FW |  | SpVgg Greuther Fürth | Gr. Fürth |