Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 06/2009 |  | Jürgen Press | MA | |||
| 06/2009 | | Karl-Heinz Fenk | AS-CO | |||
| 05/2009 | | Marco Holz | DF |  | Wacker Burghausen U19 | U19 |
| 10/2008 | | Sven Kresin | DF | |||
| 07/2008 | | Christoph Buchner | DF | | Wacker Burghausen U19 | U19 |
| 07/2008 | | Dominik Kupfer | DF |  | Hansa Rostock U19 | Rostock U19 |
| 07/2008 | | Christoph Böcher | MF |  | FSV Oggersheim | Oggersheim |
| 07/2008 | | Markus Grübl | MF | | Wacker Burghausen U19 | U19 |
| 07/2008 |  | Marco Calamita | FW |  | SC Pfullendorf | Pfullendorf |
| 07/2008 | | Christian Cappek | FW |  | 1860 Munich U19 | 1860 Munich U19 |
| 07/2008 |  | Kiril Chokchev | FW |  | USK Maximarkt Anif | USK Anif |
| 07/2008 | | Uli Fries | FW |  | SV Heimstetten | Heimstetten |
| 07/2008 | | Günter Güttler | MA |  | Jahn Regensburg | Regensburg |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 | | Kiril Chokchev | FW |  | FC Waidhofen/Ybbs | Waidhofen/Ybbs |
| 07/2008 | | Igor Jovanovic | DF |  | 1. FC Kleve | 1. FC Kleve |
| 07/2008 |  | Markus Palionis | DF |  | Dynamo Dresden | Dresden |
| 07/2008 | | Daniel Rosin | DF |  | 1. FC Magdeburg | Magdeburg |
| 07/2008 |  | Sergej Volkov | DF |  | Wacker Burghausen II | Burghausen II |
| 07/2008 | | Christian Dausel | MF |  | Rot-Weiß Erfurt | Erfurt |
| 07/2008 | | Marco Manske | MF |  | SV Sandhausen | Sandhausen |
| 07/2008 | | Christian Doll | FW |  | FC Ingolstadt 04 II | Ingolstadt II |
| 07/2008 | | Christoph Teinert | FW |  | VfR Aalen | VfR Aalen |