Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2001 |  | Roland Bonimeier | MF | |||
| 01/2001 | | Kay Wehner | GK |  | 1. FC Union Berlin | Union Berlin |
| 01/2001 |  | Ivan Dimitrov | MF |  | Akademik Svishtov | Akademik Svishtov |
| 01/2001 |  | Ryohei Nishiwaki | FW |  | JEF United Chiba | JEF United |
| 10/2000 | | Rudi Bommer | MA | |||
| 07/2000 | | Harald Huber | GK |  | SpVgg Landshut | Landshut |
| 07/2000 | | Martin Forkel | DF |  | Borussia Fulda | Fulda |
| 07/2000 | | Stefan Frühbeis | DF |  | SpVgg Unterhaching | U'haching |
| 07/2000 | | Reinhold Breu | MF |  | Eintracht Trier | Eintracht Trier |
| 07/2000 | | Michael Fischer | MF |  | Bayern München II | Bayern II |
| 07/2000 | | Christian Lutz | MF | |||
| 07/2000 | | Stephan Schmidhuber | MF | |||
| 07/2000 | | Stefan Hampl | FW |  | SC Freiburg | Freiburg |
| 07/2000 | | Mac Younga-Mouhani | FW |  | Fortuna Köln | Fortuna Köln |
| 07/2000 | | Rainer Hörgl | MA |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2001 | | Michael Fischer | MF |  | MTV Ingolstadt | MTV Ingolstadt |
| 01/2001 | | Christian Lutz | MF |  | SV Ried | SV Ried |
| 01/2001 | | Mario Tanzer | MF |  | SV Schalding-Heining | Schalding-H. |
| 08/2000 |  | Semin Alajbegović | MF |  | FSV Frankfurt | FSV Frankf. |
| 07/2000 |  | Andreas Kronenberg | GK |  | SC Pfullendorf | Pfullendorf |
| 07/2000 |  | Jiří Homola | MF |  | VfB Lübeck | Lübeck |
| 07/2000 | | Sachar Theres | MF |  | VfR Aalen | VfR Aalen |
| 07/2000 | | Borislav Vujanovic | MF |  | 1. FC Schweinfurt 05 | Schweinfurt |
| 07/2000 | | Helmut Lemberger | FW |  | Jahn Regensburg | Regensburg |
| 07/2000 | | Sascha Maier | FW |  | Waldhof Mannheim | Waldhof Mannh. |