Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2017 |  | Dušan Jevtić | MF | |||
| 01/2017 |  | Merphi Kwatu | FW |  | SV Babelsberg 03 | Babelsberg |
| 01/2017 |  | Alexander Strobl | GK |  | Union St. Florian | St. Florian |
| 10/2016 | | Manuel Neubauer | MF | |||
| 09/2016 | | Stephan Thee | MF | |||
| 08/2016 | | Stefan Mauerkirchner | FW |  | SB Chiemgau Traunstein | SB Chiemgau Traunstein |
| 08/2016 |  | Flavius Cuedan | MF | |||
| 07/2016 | | Andreas Markmüller | MF |  | SpVgg Unterhaching | U'haching |
| 07/2016 | | Gordon Büch | DF |  | FC Ingolstadt 04 II | Ingolstadt II |
| 07/2016 | | Martin Mayer | MF |  | FC Deisenhofen | Deisenhofen |
| 07/2016 |  | Florian Shalaj | MF |  | FC Ingolstadt 04 U19 | FC Ingolstadt U19 |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2017 | | Sandro Volz | GK |  | FC Töging | FC Töging |
| 01/2017 | | Lukas Däbritz | FW |  | SV Pullach | Pullach |
| 08/2016 | | Thomas Hamberger | FW | | FC Töging | FC Töging |
| 07/2016 | | Thomas Reichlmayr | GK |  | FC Pipinsried | Pipinsried |