Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2000 |  | Soulis Papadopoulos | MA | |||
| 01/2000 | | Vangelis Toyias | DF |  | Paniliakos Pyrgos | Paniliakos Pyrgos |
| 01/2000 |  | Nicos Timotheou | DF |  | APOEL Nikosia | APOEL |
| 01/2000 |  | Alejandro Sequeira | FW |  | San Jose Earthquakes | Earthquakes |
| 01/2000 |  | Cornelius Udebuluzor | FW |  | Ionikos Nikea | Ionikos |
| 09/1999 | | Nikos Karoulias | MA | |||
| 07/1999 | | Nikos Piliouras | DF | |||
| 07/1999 | | Sotiris Bouglas | GK | |||
| 07/1999 | | Dionysis Chiotis | GK |  | Ethnikos Piraeus | Ethnikos Piraeus |
| 07/1999 | | Petros Karanastasis | GK | |||
| 07/1999 | | Vassilis Ioannidis | DF |  | Panionios GSS | Panionios |
| 07/1999 | | Giannis Fountoulakis | MF | |||
| 07/1999 |  | Ahmed Kurdughli | MF | |||
| 07/1999 |  | Oliver Makor | MF |  | Limoges FC | LFC |
| 07/1999 | | Sotirios Tsagavelis | MF | |||
| 07/1999 | | Angelos Vilanakis | MF |  | Xanthi FC | Xhanti FC |
| 07/1999 | | Said Bayazid | FW | |||
| 07/1999 | | Ilias Nastopoulos | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/1999 | | Agapitos Abelas | DF |  | AO Kavala | AO Kavala |
| 07/1999 | | Panagiotis Giannopoulos | DF |  | Aris Saloniki | Aris Saloniki |
| 07/1999 | | Isaak Almanidis | FW | | Paniliakos Pyrgos | Paniliakos Pyrgos |
| 07/1999 |  | Oleg Protasov | FW |  | Panelefsiniakos Elefsinas | Panelefsiniakos |