Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 03/2017 |  | Sebastian Wolf | GK |  | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2016 | | Matthias Fichtner | GK | | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2016 | | Korbinian Müller | GK |  | Stuttgarter Kickers | Kickers |
| 07/2016 | | Justin Gaigl | DF | | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2016 | | Christoph Greger | DF |  | 1860 Munich U19 | 1860 Munich U19 |
| 07/2016 | | Leopold Krüger | MF | | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2016 | | Jim-Patrick Müller | MF |  | Dynamo Dresden | Dresden |
| 07/2016 | | Dominik Stahl | MF |  | 1860 Munich | 1860 Munich |
| 07/2016 | | Slavko Stanojevic | MF | | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2016 | | Mark Zettl | MF | | SpVgg Unterhaching U19 | U'haching U19 |
| 07/2016 | | Daniele Bruno | FW |  | Würzburger Kickers | Würzburg |
| 07/2016 | | Stephan Hain | FW | | 1860 Munich | 1860 Munich |
| 07/2016 | | Sebastian Friedl | CH-AN |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2017 | | Franz Rathmann | FW |  | FC Deisenhofen | Deisenhofen |
| 07/2016 | | Andreas Markmüller | MF |  | TSV Buchbach | TSV Buchb. |
| 07/2016 | | Sebastian Wolf | GK |  | SpVgg Unterhaching U17 | U'haching U17 |
| 07/2016 | | Vincent Friedrich | MF | | FC Deisenhofen | Deisenhofen |
| 07/2016 | | Alexander Sieghart | MF |  | Buriram United | Buriram United |
| 07/2016 |  | Nicolas Hinterseer | FW |  | FC Kitzbühel | FC Kitzbühel |
| 07/2016 | | Michael Krabler | FW |  | FC Unterföhring | Unterföhring |
| 07/2016 | | Daniel Wimmer | AS-CO |  | 1. FC Nuremberg U17 | Nuremberg U17 |