Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 |  | Manuel Konrad | MF |  | SC Freiburg | Freiburg |
| 01/2009 |  | Francisco Copado | FW | |||
| 12/2008 | | Stephan Thee | FW |  | SpVgg Unterhaching II | Unterh. II |
| 11/2008 | | Sebastian Mützel | FW | | SpVgg Unterhaching II | Unterh. II |
| 09/2008 | | Maximilian Pfaffinger | MF | | SpVgg Unterhaching II | Unterh. II |
| 07/2008 | | Christian Berchthold | GK |  | SpVgg Bayreuth | Bayreuth |
| 07/2008 |  | Milan Šušak | DF |  | Adelaide United | Adelaide United |
| 07/2008 | | Patrick Ziegler | DF | | SpVgg Unterhaching II | Unterh. II |
| 07/2008 | | Orkan Balkan | MF | | SpVgg Unterhaching II | Unterh. II |
| 07/2008 | | Bastian Bischoff | FW |  | SSV Reutlingen | Reutlingen |
| 07/2008 | | Anton Fink | FW |  | TSV 1860 München II | 1860 Mün. II |
| 07/2008 | | Marcus Steegmann | FW |  | VfR Aalen | VfR Aalen |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 | | Boris Leschinski | DF |  | Hamburger SV II | Hamburg II |
| 07/2008 | | Stefan Riederer | GK |  | 1. FC Kaiserslautern II | K'lautern II |
| 07/2008 |  | Bruno Custos | DF |  | Fortuna Düsseldorf | Düsseldorf |
| 07/2008 |  | Ceyhun Gülselam | MF |  | Trabzonspor | Trabzon |
| 07/2008 | | İbrahim Aydemir | FW |  | FC Ismaning | FC Ismaning |
| 07/2008 |  | Mario Konrad | FW |  | SCR Altach | SCR Altach |
| 07/2008 | | Robert Lechleiter | FW |  | Hansa Rostock | Rostock |