Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 |  | Radoslav Augustín | MF |  | Inter Bratislava | Inter Brat. |
| 07/2006 | | Dušan Perniš | GK |  | MŠK Žilina | Žilina |
| 07/2006 | | Jan Slovenciak | GK | |||
| 07/2006 |  | Alparslan Cakir | DF |  | VfR Mannheim | VfR Mannheim |
| 07/2006 | | Ľubomir Michalík | DF | |||
| 07/2006 | | Ivan Pecha | DF | |||
| 07/2006 |  | Luciano Djim | MF | | VfR Mannheim | VfR Mannheim |
| 07/2006 |  | Youssef Moughfire | MF | |||
| 07/2006 |  | Taianan | MF |  | Internacional | Internacional |
| 07/2006 | | Zoltán Harsányi | FW | |||
| 07/2006 | | Tomas Kozar | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2007 | | Ľubomir Michalík | DF |  | Bolton Wanderers | Bolton |
| 01/2007 | | Zoltán Harsányi | FW | | Bolton Wanderers | Bolton |
| 01/2007 | | Alparslan Cakir | DF |  | Altay Izmir | Altay Izmir |
| 01/2007 |  | Darko Matić | MF |  | Tianjin Jinmen Tiger | Tianjin Tiger |
| 01/2007 | | Taianan | MF |  | Grêmio Porto Alegre | Grêmio |
| 01/2007 |  | William Anane | FW |  | FC Ingolstadt 04 | Ingolstadt |
| 07/2006 | | Peter Hodulík | GK |  | AEK Larnaca | AEK Larnaca |
| 07/2006 | | Jozef Dojčan | DF |  | Eldus Mocenok | Eldus Mocenok |