Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 06/2013 |  | Tomáš Komenda | FW | |||
| 01/2013 |  | Michal Janec | DF |  | Tatran Liptovský Mikuláš | MFK Tatran |
| 01/2013 | | Luboš Hušek | MF |  | AC Sparta Praha B | Sparta Praha B |
| 01/2013 |  | Serhiy Rybalka | MF |  | Dynamo Kyiv | Dynamo Kyiv |
| 01/2013 | | Jiří Pimpara | DF |  | FK Varnsdorf | FK Varnsdorf |
| 01/2013 | | Martin Frýdek | DF |  | FK Senica | FK Senica |
| 01/2013 | | David Pavelka | MF |  | Sparta Prague | Sparta Prague |
| 01/2013 | | Daniel Bojčuk | GK | |||
| 01/2013 | | Přemysl Kovář | GK | | FK Varnsdorf | FK Varnsdorf |
| 01/2013 |  | Isaac Sackey | MF | |||
| 12/2012 | | Radoslav Kováč | DF |  | FC Basel 1893 | FC Basel |
| 09/2012 | | Vladimír Coufal | DF |  | SFC Opava | Opava |
| 07/2012 | | Artem Butenin | DF |  | Dynamo Kyiv II | Dyn. Kyiv II |
| 07/2012 | | Ondřej Kušnír | DF | | Sparta Prague | Sparta Prague |
| 07/2012 | | Sergiy Lyulka | DF | | Dynamo Kyiv II | Dyn. Kyiv II |
| 07/2012 | | Martin Tóth | DF |  | FC Nitra | FC Nitra |
| 07/2012 | | Jan Blažek | MF |  | Slavia Praha | Slavia Praha |
| 07/2012 |  | Maicon Souza | MF |  | Palmeiras | Palmeiras |
| 07/2012 | | Yevgen Morozenko | MF | | Dynamo Kyiv II | Dyn. Kyiv II |
| 07/2012 |  | Dzon Delarge | FW |  | FC DAC 1904 | DAC 1904 |
| 07/2012 |  | Mouhamadou N'Diaye | FW |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 02/2013 | | Erik Daniel | MF |  | Spartak Myjava | Spartak Myjava |
| 01/2013 | | Sergiy Lyulka | DF | | Dynamo Kyiv | Dynamo Kyiv |
| 01/2013 | | David Bičík | GK |  | Mersin Idmanyurdu | Mersin IY |
| 01/2013 |  | Miloš Bosančić | MF |  | Gyeongnam FC | Gyeongnam FC |
| 01/2013 | | Lukáš Vácha | MF | | Sparta Prague | Sparta Prague |
| 01/2013 | | Artem Butenin | DF | | Dynamo Kyiv II | Dyn. Kyiv II |
| 01/2013 | | Yevgen Morozenko | MF | | Dynamo Kyiv II | Dyn. Kyiv II |
| 01/2013 | | Jan Nezmar | FW |  | FC Oberlausitz | Oberlausitz |
| 09/2012 | | Michal Breznaník | MF |  | FK Amkar Perm | Amkar Perm |
| 07/2012 | | Theodor Gebre Selassie | DF |  | Werder Bremen | Werder |
| 07/2012 | | Jan Polák | DF |  | Piast Gliwice | Gliwice |
| 07/2012 | | Jiří Liška | MF | | FC Oberlausitz | Oberlausitz |
| 07/2012 | | Ján Vlasko | MF |  | Spartak Trnava | Spartak Trnava |