Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2013 |  | Vasilis Barkas | GK |  | Atromitos U19 | Atromitos U19 |
| 07/2013 |  | Luigi Cennamo | GK |  | Maccabi Netanya | Maccabi Netanya |
| 07/2013 | | Michail Sifakis | GK |  | Sporting Charleroi | Charleroi SC |
| 07/2013 | | Christos Arkoudas | DF |  | AEK Athen | AEK Athen |
| 07/2013 | | Christos Gromitsaris | DF |  | Vyzas FC | Vyzas FC |
| 07/2013 | | Anastasios Kantoutsis | DF |  | PS Kalamata | Kalamata |
| 07/2013 | | Antonis Athanasiou | MF |  | AO Kerkyra | AO Kerkyra |
| 07/2013 | | Fotis Georgiou | MF |  | PAS Giannina | PAS Giannina |
| 07/2013 |  | Javier Umbides | MF |  | Orduspor 1967 | Orduspor |
| 07/2013 | | Dimitrios Papadopoulos | FW |  | Panthrakikos | Panthrakikos |
| 04/2013 | | Georgios Paraschos | MA | |||
| 02/2013 | | Panagiotis Simitsis | MF | |||
| 02/2013 | | Stefano Napoleoni | FW |  | Levadiakos | Levadiakos |
| 01/2013 |  | Shaloze Chigozie | MF |  | Platanias Chanion | Platanias Chanion |
| 01/2013 | | Evangelos Mantzios | FW | |||
| 01/2013 |  | Manolo Reina | GK |  | Pafos FC | Pafos FC |
| 01/2013 | | Theodoros Papoutsogiannopoulos | DF |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2013 |  | Charles Itandje | GK |  | PAOK Saloniki | PAOK |
| 01/2013 | | Fotis Karagiolidis | GK |  | AEL Kalloni | AEL Kalloni |
| 01/2013 |  | Nikola Beljić | MF | | Platanias Chanion | Platanias Chanion |
| 01/2013 | | Antonis Athanasiou | MF | | AO Kerkyra | AO Kerkyra |
| 08/2012 | | Christos Gromitsaris | DF | | Vyzas FC | Vyzas FC |
| 08/2012 | | Konstantinos Bouloulis | MF |  | AS Fokikos Amfissas | Fokikos FC |
| 07/2012 | | Konstantinos Giannoulis | DF |  | 1. FC Köln | Köln |
| 07/2012 | | Anastasios Kantoutsis | DF | | PS Kalamata | Kalamata |
| 07/2012 |  | Wayne Thomas | DF |  | Veria FC | Veria FC |
| 07/2012 | | Stylianos Sfakianakis | MF |  | Panetolikos | Panetolikos |
| 07/2012 | | Andreas Tatos | MF |  | Olympiacos FC | Olympiacos FC |
| 07/2012 |  | Zuela | MF |  | APOEL Nikosia | APOEL |
| 07/2012 | | Ilias Anastasakos | FW | | Platanias Chanion | Platanias Chanion |
| 07/2012 | | Kostas Mitroglou | FW | | Olympiacos FC | Olympiacos FC |
| 07/2012 | | Georgios Donis | MA | | PAOK Saloniki | PAOK |