Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 |  | Leonidas Argyropoulos | DF | |||
| 01/2009 | | Giannis Mitseas | GK | |||
| 01/2009 | | Efstathios Rokas | DF |  | Thrasyvoulos Fylis | Thrasyvoulos Fylis |
| 01/2009 | | Vangelis Kaounos | FW | |||
| 11/2008 | | Nikos Kostenoglou | MA | |||
| 07/2008 |  | Fabeta | DF |  | Gondomar SC | Gondomar SC |
| 07/2008 | | Jorginho | DF |  | Vitória Setúbal | Vitória FC |
| 07/2008 |  | Marcelão | DF |  | Boavista | Boavista |
| 07/2008 |  | Bruno Urribarri | DF |  | Argentinos Juniors | Arg. Juniors |
| 07/2008 | | Adrián Bastía | MF |  | Racing Club | Racing Club |
| 07/2008 | | Ricardo Esteves | MF |  | CS Marítimo | CS Marítimo |
| 07/2008 |  | Rudolphe Douala | FW |  | AS Saint-Étienne | Saint-Étienne |
| 07/2008 | | Sebastián Ereros | FW |  | Tigre | C. A. T. |
| 07/2008 | | Fábio Felício | FW | | CS Marítimo | CS Marítimo |
| 07/2008 | | Carlos Carvalhal | MA | |||
| 07/2008 | | João Mário | AS-CO | | Vitória Setúbal | Vitória FC |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 01/2009 | | Sebastián Ereros | FW |  | Vélez Sarsfield | Vélez Sársfield |
| 01/2009 | | Fabeta | DF |  | Rio Ave FC | Rio Ave FC |
| 01/2009 | | Jorginho | DF |  | Paços de Ferreira | Ferreira |
| 01/2009 |  | Martin Kamburov | MF |  | Lokomotiv Sofia | Lokomotiv Sf |
| 08/2008 | | Anastasios Kyriakos | MF |  | AE Lárissa | AE Lárissa |
| 07/2008 |  | Cyril Kali | DF |  | Panserraikos | Panserraikos |
| 07/2008 |  | Fernando Machado | DF |  | Levadiakos | Levadiakos |
| 07/2008 | | Carlos Massara | DF |  | Atromitos | Atromitos |
| 07/2008 | | Rogério Martins | MF |  | Ergotelis | Ergotelis |
| 07/2008 |  | Patrick Zoundi | FW | | Panserraikos | Panserraikos |