Additions
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2016 |  | Lorenzo Avogadri | GK | |||
| 07/2016 | | Ludovico Gelmi | GK |  | Atalanta U15 | U15 |
| 07/2016 | | Andrea Campello | DF | |||
| 07/2016 |  | David Heidenreich | DF |  | FK Teplice U17 | U17 |
| 07/2016 |  | Erdis Kraja | DF |  | Atalanta U16 | U16 |
| 07/2016 | | Caleb Okoli | DF | | Atalanta U15 | U15 |
| 07/2016 | | Alessandro Cortinovis | MF | |||
| 07/2016 | | Sebastiano Finardi | MF | |||
| 07/2016 | | Davide Ghislandi | MF | |||
| 07/2016 | | Emmanuel Gyabuaa | MF | | Atalanta U15 | U15 |
| 07/2016 |  | Dejan Kulusevski | MF |  | IF Brommapojkarna U17 | U17 |
| 07/2016 | | Giorgio Losa | MF | |||
| 07/2016 | | Andrea Rizzo Pinna | MF | | Atalanta U16 | U16 |
| 07/2016 |  | António Gomes | FW |  | FC Rodange 91 | FC Rodange 91 |
| 07/2016 | | Nicolò Cambiaghi | FW | | Atalanta U16 | U16 |
| 07/2016 |  | Panagiotis Louka | FW |  | AEK Larnaca U19 | U19 |
| 07/2016 | | Matteo Pedrini | FW | | Atalanta U16 | U16 |
| 07/2016 | | Roberto Piccoli | FW | | Atalanta U15 | U15 |
Departures
| from | Name | Pos | Team | Team | ||
|---|---|---|---|---|---|---|
| 07/2016 | | Alessandro Pavan | GK |  | L.R. Vicenza U17 | U17 |
| 07/2016 | | Roberto Taliento | GK |  | Atalanta U19 | Atalanta U19 |
| 07/2016 | | Alberto Alari | DF | | Atalanta U19 | Atalanta U19 |
| 07/2016 | | Enrico Del Prato | DF | | Atalanta U19 | Atalanta U19 |
| 07/2016 | | Enrico Zanoni | DF | | Atalanta U19 | Atalanta U19 |
| 07/2016 | | Andrea Colpani | MF | | Atalanta U19 | Atalanta U19 |
| 07/2016 | | Andrea Compagnone | MF |  | Como 1907 U19 | Como 1907 U19 |
| 07/2016 | | Alessandro Mallamo | MF | | Atalanta U19 | Atalanta U19 |
| 07/2016 | | Nadir Zortea | MF |  | L.R. Vicenza U19 | Vicenza U19 |
| 07/2016 | | Salvatore Elia | FW | | Atalanta U19 | Atalanta U19 |
| 07/2016 |  | Emmanuel Latte Lath | FW |  | Atalanta | Atalanta |
| 07/2016 |  | Levente Szabó | FW | | Atalanta U19 | Atalanta U19 |