Gameplan
| Date | Round | Match | Match | Res. | Attendance | |
|---|---|---|---|---|---|---|
| 20.03.2016 |  | Matchday 27 | FK Tom Tomsk - Shinnik | TOM - Shi | 1:1 | 2.500 |
| 03.04.2016 | | Matchday 29 | FK Tom Tomsk - Enisey | TOM - Eni | 2:1 | 3.000 |
| 11.04.2016 | | Matchday 31 | FK Tom Tomsk - FC Luch | TOM - Luc | 0:2 | 1.800 |
| 25.04.2016 | | Matchday 33 | FK Tom Tomsk - Sokol Saratov | TOM - | 2:1 | 2.000 |
| 06.05.2016 | | Matchday 35 | FK Tom Tomsk - FK Sibir | TOM - FK | 1:0 | 3.300 |
| 15.05.2016 | | Matchday 37 | FK Tom Tomsk - FK Kamaz | TOM - FK | 2:0 | 2.050 |
| 27.05.2016 |  | Matches 2nd leg | FK Tom Tomsk - Kuban | TOM - KUB | 2:0 | 9.500 |
| 14.08.2016 |  | Matchday 3 | FK Tom Tomsk - FK Ufa | TOM - UFA | 1:0 | 6.873 |
| 27.08.2016 | | Matchday 5 | FK Tom Tomsk - CSKA Moskva | TOM - CSK | 0:1 | 8.250 |
| 17.09.2016 | | Matchday 7 | FK Tom Tomsk - Arsenal Tula | TOM - TUL | 1:0 | 4.250 |
| 01.10.2016 | | Matchday 9 | FK Tom Tomsk - FK Ural | TOM - URA | 1:1 | 2.950 |
| 22.10.2016 | | Matchday 11 | FK Tom Tomsk - Anzhi | TOM - AMK | 0:3 | 2.100 |
| 05.11.2016 | | Matchday 13 | FK Tom Tomsk - Spartak | TOM - SPM | 0:1 | 5.400 |